Change log
Version 1.10.0 - 2024/01/23
Adds-on
- Conversion of ADCP files from CASCADE.
- Check of generated ADCP files.
- EDMERP resource handling (update via webservice).
Version 1.9.0 - 2023/06/20
Adds-on
- Conversion of tide gauge data without vertical reference to CFPoint.
Version 1.9.0 - 2023/06/20
Adds-on
- Conversion of tide gauge data without vertical reference to CFPoint.
Version 1.8.2 - 2022/12/01
Adds-on
- Improve csrCodeList.xml handler.
- Add EDMERP SDN REFERENCE generation.
Version 1.8.1 - 2022/11/07
Adds-on
- SdnVocabulary library update to 2.2.
Version 1.8.0 - 2022/05/06
Adds-on
- Added checker and converter for "Microlitters in Sediments" files (SODV).
- SdnVocabulary library update to detect gliders.
- Update URL for csrCodeList service.
- Update URL for SoftwareVersionSoap service.
Corrections
- Fix multiple metadata generation for a same CDI.
- Fix error message (wrong line number) when station detect fails.
Version 1.7.1 - 2021/11/25
Corrections
- Fix concerning BODV and MODV conversions.
- Use log4j 2.17.0.
Version 1.7.0 - 2021/09/20
Adds-on
- Conversion of EGO1.2, 1.3 and 1.4 glider files to SeaDataNet netCDF (CFPoint) format.
- Use of "BODV" and "MODV" formats in the coupling table.
Corrections
- More information in the log when updating vocabularies.
- Message in the log on external error (e.g. if a time-out occurs during the vocabulary update).
- "Update lists" button changed to "Update vocabularies" in the "Settings" window.
- Check that unit P06::TISO is used for P01::ENDX8601.
- Conversion from MedAtlas to ODV: the station comments are kept.
- Corrections de labels, messages, typos, ...
Version 1.6.0 - 2021/01/07
Adds-on
- Added a checker for HF Radar files (NetCDF).
Corrections
- Fix a problem on ExternalResourcesManager, that blocked the batch mode.
- Medatlas -> CFPoint conversion: automatically update C17 labels from BODC vocabs.
- Partially upgrade to Java 8 Time library to fix datetime handling.
- Fix datetime management for MGD77 files.
- Handle new L20 value.
- Detect multiple parameters for same P09 in multistation Medatlas files (those should be splitted before conversion).
- Fixes on labels, messages, typos, ...
Version 1.5.3 - 2020/04/08
Adds-on
- Update URLs for CDIs, CSRs and NERC vocabularies
- Allow DPSF P09 parameter as depth below sea surface in MedAtlas files (e.g. core data)
- Allow exception for ODV files with empty vertical reference (e.g. navigation, some MGD files, contaminants in biota).
These files must contain the following comment in the ODV header: //SeaDataNet file without vertical reference.
Version 1.5.2.0 - 2019/10/29
Corrections
- ODV, fix bottom depth default value (set empty value instead of 0)
- Conversion MGD to ODV: modifications on depth parameter
Adds-on
- Use XXXX P06 unit instead of UUUU for text parameters
- Display variant in the string "Generated By" generated by Octopus in the output file
- Allow usage of the same P01 parameter multiple times in a file (an index is added to the NetCDF variable names if needed)
Version 1.5.1.0 - 2019/08/02
Corrections
- ODV biological variant: allow VOLFFMXX for Sampling Effort P01 code
- ODV format: detect an error if a mapping line does not start with // characters
- ODV format: fix bug in variant detection (case of physico-chemical file with MINWDIST and MAXWDIST)
Adds-on
- NetCDF SDN Format: improve validation log messages for global attributes
Version 1.5.0.6 - 2019/06/05
Corrections
- NetCDF SDN Format: all numeric types are allowed (not only doubles)
- Conversion MedAtlas to ODV: use of default value defined in the current station header
- ODV format: Depth is no more mandatory in timeseries that contain a parameter belonging to P02 ASLV
- Conversion NetCDF to ODV : remove extra tabulation at the end of lines
- Allow COREDIST also in cm (ULCM) as primary variable
- MedAtlas check: detect an error if a value = default and the flag != 9
Adds-on
- Take into account ODV variants for biology, flow cytometry and microlitters for checks and conversions ODV to ODV
- ODV check: the primary variable must have at least one non null value
Version 1.4.2 - 2019/03/04
Corrections
- Fix error if MedAtlas file has a last empty line
- NetCDF SDN: update global attribute 'title' : replace 'SeaDataNet_1.0 CF 1.6' with 'SeaDataNet_1.0 CF-1.6'
- Manage errors if the user is not connected and tries to update the external resources (CSR, BODC, EDMO)
- NetCDF SDN: fix expected variable type during check for DEPTH (any type is authorised)
- Manage error if input directory is empty
- Keep current window size when changing language in settings
- Set default log level to INFO
Adds-on
- Compliance with java 9 and 10
- Check consistency between values and quality flags
- Check consider as valid timeseries ODV files with a P02 ASLV parameter instead of depth
- Homogenisation of the default value for measured parameters in NetCDF SDN (-99999)
- Allow SDN CSR references using the central catalog
- Non SDN MedAtlas files are recognized but considered as invalid (can be converted)
- Conversion from MedAtlas: the SDN CSR reference is automatically added from EDMO code and cruise reference, if possible
- All conversions: non-mandatory variables are not kept if they are empty (with only default values)
- Conversion to ODV: an error is raised if one of the mandatory columns has missing value(s)
- Update SDN QC flags: add 'Q' flag
- JSON log: format added in files logs
- Choose automatically the default output directory for conversion to mono-station files
- Ability to update external resources (CSR, BODC, EDMO) in batch mode
Version 1.4.1 - 2018/06/12
Corrections
- Off line run of OCTOPUS authorised
- Conversion of MGD77 files corrected
- Correction of NetCDF to ODV conversion with empty geophysical variables
Adds-on
- Be able to check and convert the ODV files generated from MGD77
- Detect the BIO-ODV format (and extensions to flow cytometer and Microlitter data), the files are not checked, but not rejected neither (Warning to the user)
Version 1.4.0 - 2018/03/26
Corrections
- MedAtlas checker: No more checks on the max length (80) of comment lines
- Management of wrong RECORD lines values in MedAtlas files
- Fix contextual menu contrast for visibility (right click)
- netCDF generation: update unit attribute if P06 unit is deprecated and replaced by another one
Adds-on
- New format conversion: SDN netCDF to SDN ODV
- New SDN netCDF format checker
- Improvement of SDN ODV format checker
- Batch mode available for format checkers
- Add creation info in the output file: "Generated by Octopus [version] [date]"
- Automatic default output file name and extension
- If running a previous version of OCTOPUS, user receives a warning
- Check CSR references with CSR catalogue
- Documentation updated with procedures to follow for proxy configuration and for launching in batch mode, on a server without a graphical interface
Version 1.3.9 - 2017/07/21
Corrections
- ODV files: Management of all ISO date formats for the primary variable of time series and not only [YYYY-MM-DDThh:mm:ss.sss]
- ODV files: empty lines or lines with only tabs do not generate error.
- ODV files: Management of UTF8 files with BOM (Byte Order Mark)
- Allow empty SDN references using SDN_REFERENCES notation (will be ignored)
Adds-on
- ODV files, date formats: check ISO format validity and consistency between dates an formats (metadata column headers and date primary variable in timeseries)
- BODC terms management: detection of non existing or deprecated parameters. Automatic substitution of deprecated ones.
- Improve log messages: display the name(s) of file(s) with error when converting a directory
- Output file type: change 'keep/split' to 'Split to mono station files? yes/no' (no modification for batch mode)
- Use a new Octopus version number notation: major.minor.build number
Version 1.2 - 2017/01/30
Corrections
- Empty prefix is allowed in coupling table configuration
- Batch mode: fixed output path
- Fixed a bug when clearing coupling table
- MGD directories to ODV conversion: fixed a bug on ODV file names; use local_cdi_id as name for output files
Adds-on
- Improve log messages, display success messages in green
Version 1.1 - 2016/10/05
Corrections
- Fixed a bug that added empty lines in ODV files when converting MedAtlas or ODV files to ODV
- Fixed a bug in the "title" global attribute in CFPoint generated files
- Fixed a bug on format names displayed in the coupling table window
- In coupling table configuration, coupling table prefix is not mandatory
- Fixed a bug when clearing coupling table
- Conversion to ODV: fixed a bug on ISO format in date metadata column
Adds-on
- Improve log messages
- Fit dimension for CFPoint to CFPoint conversions, if exported stations are smaller than the biggest one in the input file
- Allow override files when converting to any format
Version 1.0 - 2016/03/21
First version